TSUBAME operation for FY2021 has been started (List of changes)

2021.4.6

TSUBAME operation for FY 2021 started around 17:00 today. The main changes are as follows.

  1. The system software version and the default version of apps have changed.
  2. If the student ID number changes due to higher education, your login name will change.
  3. Applications for use by research based on competitive funds and joint research agreements for the fiscal year 2021 are now being accepted.
  4. (For campus users) The usage of the interactive queue has been changed.
  5. (For access card users) Interactive queue is now available.
  6. code-server (a web implementation of VS Code) from TSUBAME portal is now available.
  7. The usage of LAMMPS, CP2K has been changed.

1. The system software version and the default version of apps have changed.

system software

  before the maintenance after the maintenance
kernel 4.12.14-95.54 4.12.14-95.65

 

ISV, freeware

  before the maintenance after the maintenance
ansys R20.1 R20.2 (*1)
amber 18up5 20up08 (*1)
comsol 55_u3 56_u1 (*1)
mathematica 12.0.0 12.2.0 (*1)
matlab R2020a R2021a
gromacs 2019.4 2020.4 (*1)
schrodinger Feb-17 2020.2 (*1) 2021.1 (*5)
nvhpc 20.9 21.2
intel compiler 19.1.0.166 19.1.3.304
intel MPI 19.6.166 19.9.304
intel inspector 20.0.0.603904 20.3.0.604771
intel ITAC 20.0.015 20.3.036
intel vtune 20.0.0.605129 20.3.0.612611
intel oneAPI compiler - 21.1.1(*2)
intel oneAPI MPI - 21.1.1(*2)
intel oneAPI inspector - 21.1.1(*2)
intel oneAPI ITAC - 21.1.1(*2)
intel oneAPI vtune - 21.1.1(*2)
forge 19.0.5 20.2.1
clang 10.0.0 11.1.0
cp2k 7.1.0 8.1.0
CUDA runtime 10.2 11.2 (*3)
cuDNN 7.6 8.1
FFTW 3.3.8 3.3.9
gcc 8.3.0 10.2.0
gnuplot 5.2.4 5.4.1
hdf5 1.10.5 1.12.0
imagemagick 7.0.6 7.0.11-1
lammps 9Oct2020 10Feb2021
llvm 3.9.1 11.1.0 (*4)
namd 2.14b2 2.15alpha1
nccl 2.4.2 2.8.4
netcdf 4.7.0 4.7.4
openfoam 7.0 8.0
openfoam-esi v1912 v2012
paraview 5.4.0 5.9.0
petsc 3.9.3 3.14.4
python 3.6.5 3.9.2
singularity 3.6.4 3.7.1
tensorflow 1.12.0 2.4.1
tensorRT 6.0.1.8 7.2.3.4
tinker 8.7.2 8.8.3
tmux 2.7 3.1 (*1)

 

Applications installed by HPCI

ABINIT-MP 1.15 1.22 (*1)
FrontISTR 5.0b 5.1.1 (*1)
GENESIS 1.3.0_gpu 1.5.1_gpu (*1)
3.3.0 3.4.0 (*1)
MODYLAS 1.0.4 1.1.0β (*1)
NTChem 2013-10.1 2013-11.1 (*1)
OpenMX 3.8.5 3.9.2 (*1)
PHASE/0 2018.01.01 2019.02 (*1)
SALMON 1.2.1 2.0.0 (*1)

 

*1: It is already installed on the current TSUBAME, and this will be the default version after maintenance.

*2: The module file name of intel oneAPI is the same as existing intel module file name.(ex: intel one API compiler 21.1.1: intel/21.1.1). The default will be the that is not intel oneAPI.

*3: CUDA 11.2 runtime will be installed, but the driver will continue to use CUDA 10.2. For this reason, the default version will remain 10.2.

*4: llvm is included in clang, if you want to use llvm please use clang module.

*5:please note that this version is not supported on SLES12SP4. 

2. If the student ID number changes due to higher education, your login name will change.

Please note that the login name has been changed automatically. You can continue to use your registered SSH public key, etc.

reference : Account Login Name

3. Applications for use by research based on competitive funds and joint research agreements for the fiscal year 2021 are now being accepted.

For more information on the procedure, please refer to here.

4. (For campus users) The usage of the interactive queue has been changed.

Until last fiscal year, qrsh -q interactive was used to submit jobs to the dedicated queue for interactive jobs, but due to a change in the scheduler configuration, it has been changed to use the dedicated command iqrsh.
Other options (such as -l h_rt to specify the usage time) and how to use via TSUBAME portal are unchanged.
For more detail, please refer to User's Guide.

5. (For access card users) Interactive queue is now available.

The interactive queue was not available from TSUBAME accounts based on access cards, it is now available from this fiscal year.

6. code-server (a web implementation of VS Code) from TSUBAME portal is now available.

code-server (an implementation that allows you to use VS Code via a web browser) from the Web application execution function in TSUBAME portal is now available.

For more detail, please refer to User's Guide.

7. The usage of LAMMPS, CP2K has been changed.

Please note that the usage of the following freeware has been changed due to the upgrade during maintenance.

  • LAMMPS
    • loading python/3.6.5 is required.
  • CP2K
    • intel module is required to load, and cp2k.psmp is used instead of cp2k.popt.

For more detail, please refer to User's Guide.

8. (For experts) Web application launcher in TSUBAME portal now supports multiple-node jobs

Web application launcher in TSUBAME portal now supports running jobs with multiple nodes.
(Warning) This does not make Jupyter Lab, code-server, or any programs running in them automatically, but it requires parallelization of your program with MPI etc. If you don't understand this, we strongly recommend not to change the number of node from 1 to avoid waste of TSUBAME points.

For more detail, please refer to User's Guide.